sights

DOI: 10.18129/B9.bioc.sights    

Statistics and dIagnostic Graphs for HTS

Bioconductor version: Release (3.8)

SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.

Author: Elika Garg [aut, cre], Carl Murie [aut], Heydar Ensha [ctb], Robert Nadon [aut]

Maintainer: Elika Garg <elika.garg at mail.mcgill.ca>

Citation (from within R, enter citation("sights")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sights", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sights")

 

HTML R Script Using **SIGHTS** R-package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BatchEffect, CellBasedAssays, MicrotitrePlateAssay, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License GPL-3 | file LICENSE
Depends R (>= 3.3)
Imports MASS (>= 7.3), qvalue(>= 2.2), ggplot2 (>= 2.0), reshape2 (>= 1.4), lattice (>= 0.2), stats (>= 3.3)
LinkingTo
Suggests testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx
SystemRequirements
Enhances
URL https://eg-r.github.io/sights/
BugReports https://github.com/eg-r/sights/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sights_1.8.0.tar.gz
Windows Binary sights_1.8.0.zip
Mac OS X 10.11 (El Capitan) sights_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sights
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sights
Package Short Url http://bioconductor.org/packages/sights/
Package Downloads Report Download Stats

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