spkTools

DOI: 10.18129/B9.bioc.spkTools    

Methods for Spike-in Arrays

Bioconductor version: Release (3.8)

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Citation (from within R, enter citation("spkTools")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("spkTools", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")

 

PDF R Script spkTools: Spike-in Data Analysis and Visualization
PDF   Reference Manual

Details

biocViews Microarray, Software, Technology
Version 1.38.0
In Bioconductor since BioC 2.4 (R-2.9) (9.5 years)
License GPL (>= 2)
Depends R (>= 2.7.0), Biobase(>= 2.5.5)
Imports Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
LinkingTo
Suggests xtable
SystemRequirements
Enhances
URL http://bioconductor.org
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spkTools_1.38.0.tar.gz
Windows Binary spkTools_1.38.0.zip
Mac OS X 10.11 (El Capitan) spkTools_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/spkTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spkTools
Package Short Url http://bioconductor.org/packages/spkTools/
Package Downloads Report Download Stats

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