spliceSites

DOI: 10.18129/B9.bioc.spliceSites    

A bioconductor package for exploration of alignment gap positions from RNA-seq data

Bioconductor version: Release (3.8)

Performs splice centered analysis on RNA-seq data.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("spliceSites")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("spliceSites", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

 

PDF R Script spliceSites
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Proteomics, RNAseq, Software
Version 1.30.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-2
Depends methods, rbamtools (>= 2.14.3), refGenome (>= 1.6.0), Biobase, Biostrings(>= 2.28.0)
Imports BiocGenerics, doBy, seqLogo, IRanges
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spliceSites_1.30.0.tar.gz
Windows Binary spliceSites_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) spliceSites_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/spliceSites
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spliceSites
Package Short Url http://bioconductor.org/packages/spliceSites/
Package Downloads Report Download Stats

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