spotSegmentation

DOI: 10.18129/B9.bioc.spotSegmentation    

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: Release (3.8)

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley <fraley at stat.washington.edu>

Citation (from within R, enter citation("spotSegmentation")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("spotSegmentation", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.56.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License GPL (>= 2)
Depends R (>= 2.10), mclust
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spotSegmentation_1.56.0.tar.gz
Windows Binary spotSegmentation_1.56.0.zip
Mac OS X 10.11 (El Capitan) spotSegmentation_1.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/spotSegmentation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spotSegmentation
Package Short Url http://bioconductor.org/packages/spotSegmentation/
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