statTarget
Statistical Analysis of Molecular Profiles
Bioconductor version: Release (3.19)
A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.
Author: Hemi Luan
Maintainer: Hemi Luan <hemi.luan at gmail.com>
Citation (from within R, enter
citation("statTarget")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("statTarget")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("statTarget")
QC_free approach with Combat method | HTML | R Script |
statTarget2 for pathway analysis | HTML | R Script |
statTarget2 On using the Graphical User Interface | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BatchEffect, ComBat, DifferentialExpression, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QualityControl, Software, Visualization |
Version | 1.34.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | LGPL (>= 3) |
Depends | R (>= 3.6.0) |
Imports | randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute |
System Requirements | |
URL | https://stattarget.github.io |
See More
Suggests | testthat, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | statTarget_1.34.0.tar.gz |
Windows Binary | statTarget_1.34.0.zip |
macOS Binary (x86_64) | statTarget_1.34.0.tgz |
macOS Binary (arm64) | statTarget_1.34.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/statTarget |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/statTarget |
Bioc Package Browser | https://code.bioconductor.org/browse/statTarget/ |
Package Short Url | https://bioconductor.org/packages/statTarget/ |
Package Downloads Report | Download Stats |