subSeq

DOI: 10.18129/B9.bioc.subSeq    

Subsampling of high-throughput sequencing count data

Bioconductor version: Release (3.8)

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

Author: David Robinson, John D. Storey, with contributions from Andrew J. Bass

Maintainer: Andrew J. Bass <ajbass at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("subSeq")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("subSeq", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("subSeq")

 

PDF R Script subSeq Example
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License MIT + file LICENSE
Depends R (>= 3.2)
Imports data.table, dplyr, tidyr, ggplot2, magrittr, qvalue(>= 1.99), digest, Biobase
LinkingTo
Suggests limma, edgeR, DESeq2, DEXSeq(>= 1.9.7), testthat, knitr
SystemRequirements
Enhances
URL http://github.com/StoreyLab/subSeq
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package subSeq_1.12.0.tar.gz
Windows Binary subSeq_1.12.0.zip
Mac OS X 10.11 (El Capitan) subSeq_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/subSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/subSeq
Package Short Url http://bioconductor.org/packages/subSeq/
Package Downloads Report Download Stats

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