switchde

DOI: 10.18129/B9.bioc.switchde    

Switch-like differential expression across single-cell trajectories

Bioconductor version: Release (3.8)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("switchde", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

 

HTML R Script An overview of the switchde package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License GPL (>= 2)
Depends R (>= 3.4), SingleCellExperiment
Imports SummarizedExperiment, dplyr, ggplot2, methods, stats
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
SystemRequirements
Enhances
URL https://github.com/kieranrcampbell/switchde
BugReports https://github.com/kieranrcampbell/switchde
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.8.0.tar.gz
Windows Binary switchde_1.8.0.zip
Mac OS X 10.11 (El Capitan) switchde_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde
Package Short Url http://bioconductor.org/packages/switchde/
Package Downloads Report Download Stats

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