tRNA

DOI: 10.18129/B9.bioc.tRNA    

tRNA: Analyzing tRNA sequences and structures

Bioconductor version: Release (3.8)

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Author: Felix GM Ernst [aut, cre]

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNA")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tRNA", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNA")

 

HTML R Script tRNA
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Software, Visualization
Version 1.0.0
License GPL-3 + file LICENSE
Depends R (>= 3.5), GenomicRanges
Imports stringr, S4Vectors, methods, assertive, BiocGenerics, IRanges, XVector, Biostrings, ggplot2, scales
LinkingTo
Suggests knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
SystemRequirements
Enhances
URL
Depends On Me tRNAdbImport, tRNAscanImport
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNA_1.0.0.tar.gz
Windows Binary tRNA_1.0.0.zip
Mac OS X 10.11 (El Capitan) tRNA_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNA
Package Short Url http://bioconductor.org/packages/tRNA/
Package Downloads Report Download Stats

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