vtpnet

DOI: 10.18129/B9.bioc.vtpnet    

variant-transcription factor-phenotype networks

Bioconductor version: Release (3.8)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("vtpnet", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF R Script vtpnet: variant-transcription factor-network tools
PDF   Reference Manual

Details

biocViews Network, Software
Version 0.22.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
LinkingTo
Suggests MotifDb, VariantAnnotation, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vtpnet_0.22.0.tar.gz
Windows Binary vtpnet_0.22.0.zip
Mac OS X 10.11 (El Capitan) vtpnet_0.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vtpnet
Package Short Url http://bioconductor.org/packages/vtpnet/
Package Downloads Report Download Stats

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