DOI: 10.18129/B9.bioc.zellkonverter  

Conversion Between scRNA-seq Objects

Bioconductor version: Release (3.18)

Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

Author: Luke Zappia [aut, cre] , Aaron Lun [aut] , Jack Kamm [ctb] , Robrecht Cannoodt [ctb] (, rcannood)

Maintainer: Luke Zappia <luke at lazappi.id.au>

Citation (from within R, enter citation("zellkonverter")):


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HTML R Script Converting to/from AnnData to SingleCellExperiments
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, SingleCell, Software
Version 1.12.1
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License MIT + file LICENSE
Imports Matrix, basilisk, reticulate, SingleCellExperiment(>= 1.11.6), SummarizedExperiment, DelayedArray, methods, S4Vectors, utils, cli
Suggests anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr, pkgload, rmarkdown, rhdf5(>= 2.45.1), scRNAseq, spelling, testthat, withr
URL https://github.com/theislab/zellkonverter
BugReports https://github.com/theislab/zellkonverter/issues
Depends On Me OSCA.intro
Imports Me singleCellTK, velociraptor
Suggests Me cellxgenedp, CuratedAtlasQueryR, GloScope, HCATonsilData, HDF5Array
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package zellkonverter_1.12.1.tar.gz
Windows Binary zellkonverter_1.12.1.zip
macOS Binary (x86_64) zellkonverter_1.12.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/zellkonverter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/zellkonverter
Bioc Package Browser https://code.bioconductor.org/browse/zellkonverter/
Package Short Url https://bioconductor.org/packages/zellkonverter/
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Old Source Packages for BioC 3.18 Source Archive

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