Changes in version 1.14.2 (2023-01-19) - Update to match Bioconductor release version Changes in version 1.13.0 (2022-10-20) - Bug fixes related to cluster labels stored as factors and plotting - Updated sparse matrix conversion to work with Matrix v1.4-2 Changes in version 1.12.0 (2022-04-30) - Update to match Bioconductor 3.15 release version Changes in version 1.11.1 (2022-03-31) - Fixes to reports - Use smoothe splines for perplexity and RPC plots Changes in version 1.11.0 (2022-03-31) - Improvments to decontX vignette - Added ability to subsample to speed up perplexity calculations - Added ability to use batch parameter with the raw matrix in decontX Changes in version 1.10.0 (2021-12-28) - Update to match Bioconductor release version Changes in version 1.9.3 (2021-10-04) - Fixed bug in checking background matrix with decontX - Switched to using Github Actions for Continuous Integration - Fixed plotting bugs in celda results reports - Speed up final step in decontX when creating final decontaminated matrix Changes in version 1.9.2 (2021-07-19) - Added a NEWS.md file to track changes to the package. - Added new tutorials and documentation generated with pkgdown. - Removed warnings in plotRPC functions. - Added use of "displayName" to several functions that show feature names. - Minor bug fix when the input matrix was sparse and contained non-integer values. - Several improvements to plotting functions. Changes in version 1.7.7 (2021-04-12) - Added handling for sparse matrices Changes in version 1.7.6 (2021-04-04) - Added functions for creating HTML reports - Fixed bug in decontX plotting Changes in version 1.7.4 (2021-03-09) - Enable input of raw/droplet matrix into decontX to estimate ambient RNA Changes in version 1.1.6 (2019-07-16) - Add multiclass decision tree Changes in version 1.1.4 (2019-05-28) - Add Alternate headings support for plotDimReduceFeature Changes in version 1.1.3 (2019-05-14) - Add multiclass decision tree (MCDT) cell cluster annotation Changes in version 1.1.2 (2019-05-14) - Fix a bug in celdaHeatmap Changes in version 1.0.1 (2019-05-09) - Default seed setting to maintain reproducibility Changes in version 0.99.34 (2019-04-23) - Minor changes to the vignettes Changes in version 0.99.23 (2019-04-10) - Remove pheatmap import Changes in version 0.99.22 (2019-04-09) - Package celda, for bi-clustering of single-cell 'omics data. Changes in version 0.99.8 (2019-03-11) - Second submission to Bioconductor Changes in version 0.99.0 (2018-05-15) - First submission to Bioconductor