Changes in version 1.10.2 ------------------------- * Welcome two important contributions by Sara Elmeligy! Sara implemented the uniqueness and dispensability terms * `reducedSimMatrix()` outputs now the uniqueness and dispensability terms * The column termDispensability replaces the current parentSimScore. They're equivalent * `reducedSimMatrix()` now defaults to using the "uniqueness" if no vector of scores are provided * Some minor fixes Changes in version 1.10.1 ------------------------- * Add citation to microPublication Biology Changes in version 1.8.1 ------------------------- * New features in scatterPlot(): - dimensionality reduction with UMAP - plot only parents * Fix picking the right point size in scatterPlot() * Improve vignette Changes in version 1.7.1 ------------------------- * Deprecate org.Pf.plasmo.db Changes in version 1.5.4 ------------------------- * `scatterPlot()` doesn't warn anymore that we're using a deprecated parm to remove the guide Changes in version 1.5.1 ------------------------- * `calculateSimMatrix()` now allows using arbitrary keys from Orgdb packages. Credit: illumination-k. Thanks! Changes in version 1.3.1 ------------------------- * Bug fix for obsolete GO terms Changes in version 1.2.1 ------------------------- * allow alternative keytypes in custom OrgDB objects Changes in version 1.1.3 ------------------------- * Warn user when no scores are provided and thus falling back to term's size as the score to rank terms Changes in version 1.1.2 ------------------------- * Fix bug that would break `reduceSimMatrix()` when no scores were provided Changes in version 0.99.1 ------------------------- * First release to Bioconductor