R/AllGenerics.R, R/SingleCellAssay-methods.R
cData.RdThese functions are now all deprecated and will be removed in a future release.
cData(sc) cData(sc) <- value # S4 method for SingleCellAssay cData(sc) # S4 method for SingleCellAssay cData(sc) <- value # S4 method for SingleCellAssay,SingleCellAssay combine(x, y, ...) # S4 method for SingleCellAssay,ANY combine(x, y, ...)
| sc | An object with |
|---|---|
| value | replacement value |
| x |
|
| y |
|
| ... |
|
DataFrame or modifies the SingleCellAssay object in place
cData(sc): Return the cellData data.frame.
cData(sc)<-value: Replace the cellData with value, which can be either an AnnotatedDataFrame or data.frame. The replacement is checked that it has mandatory fields defined by its class.
combine(x, y, ...): Concatenate two experiments along rows/columns
You should transition to use the following replacements:
cDatacolData
fDatamcols
exprsassay
combinecbind2 or rbind2
exprs
data(vbetaFA) stopifnot(all.equal(hushWarning(cData(vbetaFA), 'deprecated'),colData(vbetaFA))) stopifnot(all.equal(hushWarning(fData(vbetaFA), 'deprecated'), mcols(vbetaFA))) stopifnot(all.equal(hushWarning(exprs(vbetaFA), 'deprecated'), t(assay(vbetaFA))))