AHLRBaseDbs

DOI: 10.18129/B9.bioc.AHLRBaseDbs    

LRBaseDbs for AnnotationHub

Bioconductor version: Release (3.14)

Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("AHLRBaseDbs")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHLRBaseDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHLRBaseDbs")

 

HTML R Script Provide LRBaseDb databases for AnnotationHub
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, AnnotationHub, FunctionalAnnotation, LRBaseDb
Version 1.2.0
License Artistic-2.0
Depends R (>= 4.1.0)
Imports AnnotationHub(>= 2.22.0)
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/rikenbit/AHLRBaseDbs/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AHLRBaseDbs_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/AHLRBaseDbs/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: