synaptome.db

DOI: 10.18129/B9.bioc.synaptome.db    

Synamptosome Proteome Database

Bioconductor version: Release (3.14)

The package contains local copy of the Synaptic proteome database. On top of this it provide a set of utility R functions to query and analyse its content. It allows extraction of information for specific genes and building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions.

Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]

Maintainer: Oksana Sorokina <oksana.sorokina at ed.ac.uk>

Citation (from within R, enter citation("synaptome.db")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synaptome.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synaptome.db")

 

HTML R Script synaptome.db
PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version 0.99.8
License Artistic-2.0
Depends R (>= 3.5.0), synaptome.data
Imports DBI, RSQLite, dplyr, dbplyr, igraph, Rdpack, AnnotationHub
LinkingTo
Suggests rmarkdown, knitr, pander, testthat, devtools, markdown
SystemRequirements
Enhances
URL
BugReports https://github.com/lptolik/synaptome.db/issues/
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package synaptome.db_0.99.8.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/synaptome.db/
Package Downloads Report Download Stats

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