PCHiCdata
Promoter Capture Hi-C data
Bioconductor version: Release (3.19)
Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.
Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>
Citation (from within R, enter
citation("PCHiCdata")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PCHiCdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PCHiCdata")
PCHiCdata Vignette | HTML | R Script |
Reference Manual |
Details
biocViews | ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell |
Version | 1.32.0 |
License | Artistic-2.0 |
Depends | R (>= 3.2), Chicago |
Imports | |
System Requirements | |
URL |
See More
Suggests | testthat, BiocStyle, knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | Chicago |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PCHiCdata_1.32.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/PCHiCdata |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PCHiCdata |
Package Short Url | https://bioconductor.org/packages/PCHiCdata/ |
Package Downloads Report | Download Stats |