SpatialDatasets
Collection of spatial omics datasets
Bioconductor version: Release (3.19)
This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.
Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]
Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>
citation("SpatialDatasets")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpatialDatasets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpatialDatasets")
The SpatialDataset package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData |
Version | 1.2.0 |
License | GPL-3 |
Depends | ExperimentHub, SpatialExperiment |
Imports | utils |
System Requirements | |
URL | https://github.com/SydneyBioX/SpatialDatasets |
Bug Reports | https://github.com/SydneyBioX/SpatialDatasets/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | lisaClust, spicyR |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SpatialDatasets_1.2.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/SpatialDatasets |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpatialDatasets |
Package Short Url | https://bioconductor.org/packages/SpatialDatasets/ |
Package Downloads Report | Download Stats |