VariantToolsData
Data for the VariantTools tutorial
Bioconductor version: Release (3.19)
Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla at gene.com>
Citation (from within R, enter
citation("VariantToolsData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VariantToolsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VariantToolsData")
VariantTools Example Data | R Script | |
Reference Manual |
Details
biocViews | ExperimentData, HapMap, SNPData, SequencingData |
Version | 1.28.0 |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), VariantAnnotation(>= 1.7.35) |
Imports | BiocGenerics, GenomicRanges |
System Requirements | |
URL |
See More
Suggests | VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | VariantToolsData_1.28.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/VariantToolsData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VariantToolsData |
Package Short Url | https://bioconductor.org/packages/VariantToolsData/ |
Package Downloads Report | Download Stats |