minionSummaryData
Summarised MinION sequencing data published by Ashton et al. 2015
Bioconductor version: Release (3.19)
Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.
Author: Mike Smith [aut, cre]
Maintainer: Mike Smith <grimbough at gmail.com>
Citation (from within R, enter
citation("minionSummaryData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("minionSummaryData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("minionSummaryData")
Creating example MinION summary dataset | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ExperimentData, SequencingData |
Version | 1.34.0 |
License | MIT + file LICENSE |
Depends | R (>= 3.2.0) |
Imports | |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | IONiseR |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | minionSummaryData_1.34.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/minionSummaryData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/minionSummaryData |
Package Short Url | https://bioconductor.org/packages/minionSummaryData/ |
Package Downloads Report | Download Stats |