msd16s
This is the released version of msd16s; for the devel version, see msd16s.
Healthy and moderate to severe diarrhea 16S expression data
Bioconductor version: Release (3.20)
Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.
Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop
Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>
citation("msd16s")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msd16s")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msd16s")
msd16s | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, MicrobiomeData, SequencingData |
Version | 1.25.0 |
License | Artistic-2.0 |
Depends | R (>= 2.10), Biobase, metagenomeSeq |
Imports | |
System Requirements | |
URL | http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | scTreeViz |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | msd16s_1.25.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/msd16s |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msd16s |
Package Short Url | https://bioconductor.org/packages/msd16s/ |
Package Downloads Report | Download Stats |