orthosData
Data for the orthos package
Bioconductor version: Release (3.19)
`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.
Author: Panagiotis Papasaikas [aut, cre] , Charlotte Soneson [aut] , Michael Stadler [aut] , Friedrich Miescher Institute for Biomedical Research [cph]
Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>
citation("orthosData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("orthosData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("orthosData")
1. Introduction to orthos | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ExperimentData, ExperimentHub, RNASeqData |
Version | 1.2.0 |
License | MIT + file LICENSE |
Depends | |
Imports | AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment |
System Requirements | |
URL | https://github.com/fmicompbio/orthosData |
Bug Reports | https://github.com/fmicompbio/orthosData/issues |
See More
Suggests | BiocStyle, ggplot2, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | orthos |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | orthosData_1.2.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/orthosData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/orthosData |
Package Short Url | https://bioconductor.org/packages/orthosData/ |
Package Downloads Report | Download Stats |