tcgaWGBSData.hg19

DOI: 10.18129/B9.bioc.tcgaWGBSData.hg19    

Data

Bioconductor version: Release (3.9)

Data package for WGBS Data in TCGA. Data is stored as SummarizedExperiment Format. See vignette on how to extract the data and perform differential methylation analysis.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

Citation (from within R, enter citation("tcgaWGBSData.hg19")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tcgaWGBSData.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tcgaWGBSData.hg19")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data, SequencingData
Version 1.2.0
License GPL-2
Depends R (>= 3.5.0), ExperimentHub
Imports bsseq, knitr
LinkingTo
Suggests
SystemRequirements
Enhances
URL
BugReports https://github.com/aryeelab/tcgaWGBSData.hg19/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tcgaWGBSData.hg19_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/tcgaWGBSData.hg19
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tcgaWGBSData.hg19
Package Short Url http://bioconductor.org/packages/tcgaWGBSData.hg19/
Package Downloads Report Download Stats

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