tissueTreg
TWGBS and RNA-seq data from tissue T regulatory cells from mice
Bioconductor version: Release (3.19)
The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.
Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]
Maintainer: Charles Imbusch <c.imbusch at dkfz.de>
citation("tissueTreg")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tissueTreg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tissueTreg")
tissueTreg | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue |
Version | 1.24.0 |
License | GPL (>= 2) |
Depends | R (>= 3.5) |
Imports | |
System Requirements | |
URL | https://github.com/cimbusch/tissueTreg |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | DMRcate |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | tissueTreg_1.24.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/tissueTreg |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tissueTreg |
Package Short Url | https://bioconductor.org/packages/tissueTreg/ |
Package Downloads Report | Download Stats |