Workflow Package: highthroughputassays

Using Bioconductor with High Throughput Assays

Bioconductor version: Release (3.7)

The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowViz` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("highthroughputassays")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("highthroughputassays")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("highthroughputassays")

 

HTML R Script Using Bioconductor with High Throughput Assays

Details

biocViews ProteomicsWorkflow, Workflow
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.3.0), flowCore, flowStats, flowViz
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://www.bioconductor.org/help/workflows/highthroughputassays/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: