Package Download_score a4 59 a4Base 110 a4Classif 86 a4Core 124 a4Preproc 143 a4Reporting 102 ABAEnrichment 6 ABarray 53 abseqR 45 ABSSeq 85 acde 66 ACE 74 aCGH 150 ACME 65 ADaCGH2 46 ADAM 100 ADAMgui 82 adaptest 2 adductomicsR 45 ADImpute 63 adSplit 48 adverSCarial 16 AffiXcan 46 affxparser 1580 affy 8221 affycomp 79 AffyCompatible 21 affyContam 75 affycoretools 372 AffyExpress 3 affyILM 43 affyio 8103 affylmGUI 51 affyPara 4 affypdnn 3 affyPLM 1317 affyQCReport 8 AffyRNADegradation 42 AffyTiling 2 AGDEX 46 aggregateBioVar 58 Agi4x44PreProcess 3 agilp 93 AgiMicroRna 123 AHMassBank 29 AIMS 393 airpart 44 alabaster 35 alabaster.base 88 alabaster.bumpy 65 alabaster.files 15 alabaster.mae 66 alabaster.matrix 74 alabaster.ranges 70 alabaster.sce 62 alabaster.schemas 92 alabaster.se 69 alabaster.spatial 63 alabaster.string 66 alabaster.vcf 61 ALDEx2 1119 alevinQC 73 AllelicImbalance 66 AlphaBeta 45 alpine 49 ALPS 2 AlpsNMR 53 alsace 6 altcdfenvs 75 AMARETTO 113 AMOUNTAIN 90 amplican 60 ampliQueso 2 AnalysisPageServer 2 anamiR 3 Anaquin 49 ANCOMBC 1152 AneuFinder 74 ANF 38 animalcules 102 annaffy 236 AnnBuilder 1 annmap 100 annotate 18825 AnnotationDbi 37424 AnnotationFilter 9745 AnnotationForge 2511 AnnotationFuncs 7 AnnotationHub 10170 AnnotationHubData 294 annotationTools 109 annotatr 422 anota 60 anota2seq 58 antiProfiles 59 AnVIL 589 AnVILBilling 54 AnVILPublish 42 AnVILWorkflow 30 APAlyzer 53 apComplex 44 apeglm 3280 APL 105 applera 0 appreci8R 81 aroma.light 1868 ArrayExpress 406 ArrayExpressHTS 10 arrayMagic 1 arrayMvout 39 arrayQCplot 1 arrayQuality 76 arrayQualityMetrics 500 ArrayTools 6 ArrayTV 3 ARRmNormalization 51 artMS 58 ASAFE 53 ASEB 55 ASGSCA 59 ASICS 64 asmn 1 ASpediaFI 9 ASpli 78 AssessORF 43 ASSET 101 ASSIGN 70 ASURAT 51 ATACCoGAPS 36 ATACseqQC 309 ATACseqTFEA 42 atena 106 AtlasRDF 2 atSNP 47 attract 42 AUCell 2072 autonomics 46 Autotuner 3 AWFisher 47 awst 47 BaalChIP 51 BAC 24 bacon 90 BADER 64 BadRegionFinder 38 BAGS 42 ballgown 656 bambu 241 bamsignals 1042 BANDITS 92 bandle 47 banocc 67 barcodetrackR 43 basecallQC 50 BaseSpaceR 61 Basic4Cseq 45 BASiCS 139 BASiCStan 36 BasicSTARRseq 46 basilisk 4395 basilisk.utils 4032 batchelor 3722 BatchQC 93 BayesKnockdown 41 BayesPeak 6 BayesSpace 197 bayNorm 70 baySeq 361 BBCAnalyzer 38 BCRANK 51 bcSeq 47 BDMMAcorrect 33 beachmat 14540 beachmat.hdf5 22 beadarray 704 beadarraySNP 45 BeadDataPackR 676 BeadExplorer 1 BEARscc 38 BEAT 37 BEclear 55 beer 47 benchdamic 57 betr 3 BG2 33 bgafun 3 BgeeCall 45 BgeeDB 92 BGmix 37 bgx 42 BHC 89 BicARE 118 BiFET 44 BiGGR 46 bigmelon 48 bigmemoryExtras 5 bigPint 45 bim 0 BindingSiteFinder 49 bioassayR 49 Biobase 45924 biobroom 166 biobtreeR 55 bioCancer 55 BioCartaImage 15 BiocBaseUtils 4524 BiocBook 17 BiocCaseStudies 5 BiocCheck 1476 biocDatasets 1 BiocDockerManager 39 BiocFHIR 38 BiocFileCache 24496 BiocGenerics 53345 biocGraph 145 BiocHail 27 BiocHubsShiny 62 BiocInstaller 552 BiocIO 18143 BiocNeighbors 9617 BiocOncoTK 61 BioCor 67 BiocParallel 42507 BiocPkgTools 159 BiocSet 230 BiocSingular 11439 BiocSklearn 51 BiocStyle 6053 biocthis 220 BiocVersion 56399 biocViews 4219 BiocWorkflowTools 169 biodb 155 biodbChebi 65 biodbExpasy 37 biodbHmdb 49 biodbKegg 58 biodbLipidmaps 37 biodbMirbase 34 biodbNcbi 40 biodbNci 35 biodbUniprot 40 bioDist 230 biomaRt 23556 BioMedR 1 biomformat 5218 BioMM 31 BioMVCClass 40 biomvRCNS 21 BioNAR 47 BioNERO 215 BioNet 237 BioNetStat 56 BioQC 107 BioSeqClass 5 biosigner 68 Biostrings 42161 biosvd 3 BioTIP 58 biotmle 52 biovizBase 5354 BiRewire 112 birta 7 birte 2 biscuiteer 47 BiSeq 122 BitSeq 14 blacksheepr 41 blima 39 BLMA 46 BloodGen3Module 112 bluster 4443 bnbc 93 bnem 36 BOBaFIT 40 borealis 29 BPRMeth 75 BRAIN 90 brainflowprobes 36 brainImageR 1 BrainSABER 7 BrainStars 3 branchpointer 58 breakpointR 53 brendaDb 40 BRGenomics 131 bridge 10 BridgeDbR 79 BrowserViz 150 BrowserVizDemo 1 BSgenome 12620 BSgenomeForge 59 bsseq 1303 BubbleTree 44 BufferedMatrix 85 BufferedMatrixMethods 42 bugsigdbr 159 BUMHMM 37 bumphunter 2513 BumpyMatrix 421 BUS 39 BUScorrect 37 BUSpaRse 177 BUSseq 37 CaDrA 15 CAEN 34 CAFE 41 CAGEfightR 130 cageminer 37 CAGEr 96 CALIB 4 calm 49 CAMERA 461 CAMTHC 2 canceR 56 cancerclass 60 CancerInSilico 15 CancerMutationAnalysis 4 CancerSubtypes 132 CAnD 4 caOmicsV 3 cardelino 46 Cardinal 140 CardinalIO 65 CARNIVAL 160 casper 38 CATALYST 414 Category 1771 categoryCompare 39 CausalR 63 cbaf 39 CBEA 93 cBioPortalData 411 CBNplot 100 cbpManager 40 ccfindR 80 ccImpute 39 ccmap 68 CCPlotR 18 CCPROMISE 39 ccrepe 81 CDI 11 celaref 56 celda 561 CellaRepertorium 51 CellBarcode 43 cellbaseR 56 CellBench 115 cellGrowth 3 cellHTS 3 cellHTS2 141 CelliD 230 cellity 48 CellMapper 49 cellmigRation 50 CellMixS 69 CellNOptR 120 cellscape 42 CellScore 38 CellTrails 43 cellTree 10 cellxgenedp 115 CEMiTool 112 censcyt 43 Cepo 149 ceRNAnetsim 51 CeTF 60 CexoR 38 CFAssay 53 cfdnakit 15 cfDNAPro 41 cfTools 29 CGEN 59 CGHbase 370 CGHcall 339 cghMCR 46 CGHnormaliter 39 CGHregions 55 ChAMP 570 CHARGE 2 charm 4 ChemmineOB 319 ChemmineR 898 CHETAH 88 ChIC 23 Chicago 91 chihaya 41 chimera 5 chimeraviz 83 ChIPanalyser 40 ChIPComp 48 chipenrich 141 ChIPexoQual 38 ChIPpeakAnno 854 ChIPQC 307 ChIPseeker 1691 chipseq 523 ChIPseqR 63 ChIPSeqSpike 5 ChIPsim 64 ChIPXpress 77 chopsticks 87 chroGPS 3 chromDraw 39 ChromHeatMap 108 ChromoViz 1 chromPlot 120 ChromSCape 52 chromstaR 70 chromswitch 27 chromVAR 1046 CHRONOS 42 cicero 213 CIMICE 40 CINdex 57 circRNAprofiler 50 CircSeqAlignTk 31 cisPath 53 CiteFuse 83 ClassifyR 222 cleanUpdTSeq 78 cleaver 162 clevRvis 39 clippda 40 clipper 77 cliProfiler 39 cliqueMS 97 Clomial 51 Clonality 27 clonotypeR 6 clst 75 clstutils 45 CluMSID 48 clustComp 57 clusterExperiment 334 ClusterJudge 53 clusterProfiler 16833 clusterSeq 22 ClusterSignificance 54 clusterStab 62 clustifyr 124 ClustIRR 15 CMA 97 cmapR 374 CNAnorm 45 CNEr 2727 cn.farms 44 cn.mops 207 CNORdt 39 CNORfeeder 41 CNORfuzzy 40 CNORode 60 CNPBayes 2 CNTools 108 CNVfilteR 40 CNVgears 38 cnvGSA 47 CNViz 35 CNVMetrics 38 CNVPanelizer 47 CNVRanger 106 CNVrd2 38 CNVtools 3 cobindR 2 CoCiteStats 34 COCOA 42 codelink 53 CODEX 87 coexnet 9 CoGAPS 213 cogena 71 cogeqc 55 Cogito 37 coGPS 49 COHCAP 61 cola 119 comapr 41 combi 42 coMET 71 coMethDMR 40 compartmap 31 COMPASS 57 compcodeR 66 compEpiTools 48 CompGO 3 ComplexHeatmap 13045 CompoundDb 338 ComPrAn 47 compSPOT 12 conclus 8 concordexR 53 condcomp 1 condiments 61 CONFESS 38 consensus 53 ConsensusClusterPlus 2843 consensusDE 44 consensusOV 77 consensusSeekeR 86 consICA 96 CONSTANd 53 contiBAIT 36 conumee 134 convert 124 copa 41 COPDSexualDimorphism 1 copynumber 179 CopyNumber450k 1 CopyNumberPlots 114 CopywriteR 21 coRdon 159 CoRegFlux 1 CoRegNet 55 CoreGx 260 Cormotif 36 CorMut 3 coRNAi 4 corral 65 CORREP 54 coseq 96 CoSIA 37 cosmiq 38 cosmo 2 cosmoGUI 2 cosmosR 60 COSNet 56 COTAN 60 CountClust 5 countsimQC 129 covEB 37 CoverageView 52 covRNA 37 cpvSNP 39 cqn 246 CRImage 53 crisprBase 121 crisprBowtie 114 crisprBwa 50 crisprDesign 97 crisprScore 124 CRISPRseek 116 crisprseekplus 25 CrispRVariants 127 crisprVerse 53 crisprViz 91 crlmm 196 CrossICC 1 crossmeta 97 CSAR 62 csaw 479 csdR 39 CSSP 40 CSSQ 37 ctc 269 CTdata 35 CTDquerier 41 ctgGEM 2 cTRAP 44 ctsGE 42 CTSV 37 cummeRbund 218 CuratedAtlasQueryR 20 customCMPdb 40 customProDB 54 CVE 2 cyanoFilter 32 cycle 37 cydar 63 CytoDx 44 cytofast 3 cytofkit 20 CyTOFpower 38 cytofQC 29 CytoGLMM 77 cytoKernel 34 cytolib 2497 cytomapper 251 cytoMEM 67 CytoML 471 CytoPipeline 68 CytoPipelineGUI 12 CytoTree 17 cytoviewer 62 dada2 2143 dagLogo 49 daMA 54 DAMEfinder 42 DaMiRseq 84 DAPAR 106 DART 59 DASC 0 DASiR 2 dasper 25 DAVIDQuery 3 DBChIP 5 dcanr 114 DCATS 22 dce 47 dcGSA 40 DChIPRep 2 ddCt 78 ddgraph 2 ddPCRclust 46 dearseq 156 debCAM 53 debrowser 164 DECIPHER 2590 deco 9 DEComplexDisease 9 decompTumor2Sig 98 DeconRNASeq 200 decontam 1551 decontX 38 deconvR 44 decoupleR 944 DEDS 3 DeepBlueR 43 DeepPINCS 66 deepSNV 121 DEFormats 235 DegNorm 45 DEGraph 43 DEGreport 525 DEGseq 150 DelayedArray 42674 DelayedDataFrame 44 DelayedMatrixStats 15494 DelayedRandomArray 73 DelayedTensor 36 DELocal 32 deltaCaptureC 39 deltaGseg 50 DeMAND 54 DeMixT 76 demuxmix 191 demuxSNP 19 densvis 3177 DEP 454 DepecheR 170 DepInfeR 38 DEqMS 202 derfinder 507 derfinderHelper 504 derfinderPlot 114 DEScan2 41 DESeq 255 DESeq2 20055 DEsingle 251 DESpace 36 destiny 693 DEsubs 44 DEWSeq 46 DExMA 52 DEXSeq 1411 dexus 4 DFP 36 DIAlignR 44 DiffBind 995 diffcoexp 149 diffcyt 269 DifferentialRegulation 42 diffGeneAnalysis 48 diffHic 90 DiffLogo 65 diffloop 28 diffuStats 58 diffUTR 33 diggit 40 Dino 41 Director 48 dir.expiry 3909 DirichletMultinomial 3955 discordant 67 DiscoRhythm 52 distinct 188 dittoSeq 1179 divergence 34 dks 48 DMCFB 31 DMCHMM 38 DMRcaller 66 DMRcate 826 DMRforPairs 27 DMRScan 37 dmrseq 162 DNABarcodeCompatibility 36 DNABarcodes 175 DNAcopy 5160 DNAfusion 36 DNaseR 1 DNAshapeR 62 domainsignatures 3 DominoEffect 38 doppelgangR 100 DOQTL 3 Doscheda 39 DOSE 16439 doseR 37 doubletrouble 39 dpeak 27 drawProteins 176 dreamlet 16 DRIMSeq 314 DriverNet 55 DropletUtils 2627 drugTargetInteractions 49 DrugVsDisease 57 dSimer 2 DSS 978 dStruct 36 DTA 82 dualKS 4 Dune 37 DupChecker 2 dupRadar 94 dyebias 39 DynDoc 1215 easier 129 EasyCellType 44 easylift 14 EasyqpcR 4 easyreporting 53 easyRNASeq 138 EBarrays 168 EBcoexpress 57 EBImage 2542 EBSEA 41 EBSeq 397 EBSeqHMM 51 ecolitk 39 EDASeq 1678 edd 2 EDDA 2 edge 82 edgeR 21836 EDIRquery 28 eds 309 eegc 72 EGAD 49 EGSEA 128 eiR 44 eisa 5 eisaR 91 ELBOW 2 ELMER 158 EMDomics 54 EmpiricalBrownsMethod 117 ENCODExplorer 3 EnhancedVolcano 4041 enhancerHomologSearch 37 EnMCB 39 ENmix 182 EnrichedHeatmap 536 EnrichmentBrowser 526 enrichplot 17090 enrichTF 62 enrichViewNet 10 ensembldb 9541 ensemblVEP 129 ENVISIONQuery 3 epialleleR 43 EpiCompare 40 epidecodeR 35 EpiDISH 496 epigenomix 38 epigraHMM 41 epihet 8 EpiMix 34 epimutacions 41 epiNEM 89 epistack 41 epistasisGA 32 EpiTxDb 56 epivizr 75 epivizrChart 38 epivizrData 89 epivizrServer 120 epivizrStandalone 48 erccdashboard 51 erma 68 ERSSA 40 esATAC 74 escape 294 escheR 88 esetVis 59 eudysbiome 35 evaluomeR 42 EventPointer 46 EWCE 129 ExCluster 35 ExiMiR 40 exomeCopy 233 exomePeak 8 exomePeak2 96 exonmap 2 ExperimentHub 6957 ExperimentHubData 248 ExperimentSubset 39 explorase 5 ExploreModelMatrix 136 ExpressionAtlas 153 ExpressionView 3 exprExternal 0 externalVector 1 extraChIPs 41 fabia 159 facopy 1 factDesign 39 factR 42 FamAgg 57 famat 38 farms 45 fastLiquidAssociation 39 FastqCleaner 72 fastreeR 69 fastseg 701 fbat 2 FCBF 54 fCCAC 36 fCI 52 fcoex 85 fcScan 38 fdrame 50 FEAST 92 FeatSeekR 34 fedup 38 FELLA 124 FEM 20 fenr 14 ffpe 49 fgga 36 FGNet 104 fgsea 15948 FilterFFPE 35 FindIT2 45 FindMyFriends 5 FISHalyseR 37 fishpond 290 FitHiC 64 flagme 40 FLAMES 55 flipflop 2 flowAI 519 flowBeads 38 flowBin 38 flowcatchR 41 flowCHIC 39 flowCL 9 flowClean 200 flowClust 784 flowCore 2451 flowCut 79 flowCyBar 51 flowDensity 202 flowFit 5 flowFlowJo 3 flowFP 100 flowGate 45 flowGraph 54 flowMap 46 flowMatch 42 flowMeans 115 flowMerge 95 flowPeaks 151 flowPhyto 2 flowPloidy 45 flowPlots 41 flowQ 2 flowQB 3 FlowRepositoryR 4 FlowSOM 982 flowSpecs 48 flowSpy 1 flowStats 510 flowTime 43 flowTrans 53 flowType 4 flowUtils 33 flowViz 939 flowVS 83 flowWorkspace 1161 fmcsR 236 fmrs 121 fobitools 37 focalCall 2 FoldGO 29 FourCSeq 5 FRASER 93 frenchFISH 46 FRGEpistasis 53 frma 124 frmaTools 53 FScanR 34 FunChIP 50 FunciSNP 3 funtooNorm 35 FuseSOM 45 GA4GHclient 73 GA4GHshiny 37 gaga 77 gage 818 gaggle 35 gaia 21 GAPGOM 4 GAprediction 52 garfield 56 GARS 36 GateFinder 36 gatom 12 gaucho 2 GBScleanR 36 gcapc 45 gcatest 41 gCMAP 4 gCMAPWeb 3 gCrisprTools 43 gcrma 1340 GCSConnection 2 GCSFilesystem 3 GCSscore 26 GDCRNATools 277 gDNAx 16 gDR 13 gDRcore 47 gDRimport 45 gDRstyle 36 gDRutils 51 GDSArray 104 gdsfmt 2054 geecc 3 GEM 54 gemini 55 gemma.R 48 genArise 52 genbankr 151 gene2pathway 2 GeneAccord 8 GeneAnswers 15 geneAttribution 38 GeneBreak 47 geneClassifiers 37 GENE.E 4 GeneExpressionSignature 47 genefilter 13170 genefu 379 GeneGA 43 GeneGeneInteR 40 GeneGroupAnalysis 1 GeneMeta 71 GeneNetworkBuilder 52 GeneOverlap 359 geneplast 82 geneplotter 9540 GeneR 3 geneRecommender 38 GeneRegionScan 42 GeneRfold 1 geneRxCluster 38 GeneSelectMMD 80 GeneSelector 4 GENESIS 319 GeneSpring 2 GeneStructureTools 59 geNetClassifier 108 GeneticsBase 2 GeneticsDesign 3 GeneticsPed 98 GeneTonic 201 GeneTraffic 2 GeneTS 1 geneXtendeR 95 GENIE3 1132 genoCN 51 GenoGAM 3 genomation 575 GenomAutomorphism 32 GenomeBase 0 GenomeGraphs 9 GenomeInfoDb 53284 genomeIntervals 134 genomes 62 GenomicAlignments 23129 GenomicDataCommons 1196 GenomicDistributions 77 GenomicFeatures 18502 GenomicFiles 1119 genomicInstability 39 GenomicInteractionNodes 36 GenomicInteractions 304 GenomicOZone 38 GenomicPlot 15 GenomicRanges 39911 GenomicScores 547 GenomicSuperSignature 44 GenomicTuples 36 Genominator 4 genoset 11 genotypeeval 12 GenoView 1 genphen 3 GenProSeq 31 GenRank 2 GenVisR 319 GeoDiff 65 GEOexplorer 50 GEOfastq 66 GEOmetadb 214 GeomxTools 339 GEOquery 8747 GEOsearch 2 GEOsubmission 38 GeoTcgaData 52 gep2pep 42 gespeR 55 getDEE2 43 geva 48 GEWIST 46 gff3Plotter 1 gg4way 13 GGBase 6 ggbio 2063 ggcyto 840 ggkegg 80 ggmanh 93 ggmsa 470 GGPA 39 ggsc 21 ggspavis 104 GGtools 6 ggtree 18766 ggtreeDendro 48 ggtreeExtra 957 GIGSEA 53 girafe 69 GISPA 38 GLAD 212 GladiaTOX 39 Glimma 1224 glmGamPoi 3253 glmSparseNet 131 GlobalAncova 954 globalSeq 52 globaltest 1741 GloScope 12 gmapR 129 GmicR 48 gmoviz 40 GMRP 37 GNET2 43 GNOSIS 12 goCluster 0 GOexpress 76 GOfuncR 280 GOFunction 4 GoogleGenomics 2 GOpro 105 goProfiles 95 GOSemSim 15871 goseq 1198 GOSim 116 goSorensen 31 goSTAG 45 GOstats 1639 GOsummaries 54 GOTHiC 64 goTools 48 GPA 54 gpart 11 gpls 163 gprege 4 gpuMagic 41 gQTLBase 4 gQTLstats 4 gramm4R 2 GRaNIE 83 granulator 130 graper 51 graph 17923 GraphAlignment 54 GraphAT 40 graphite 2776 GraphPAC 58 GRENITS 52 GreyListChIP 905 GRmetrics 72 groHMM 56 GRridge 16 GSALightning 56 GSAR 90 GSCA 43 gscreend 36 GSEABase 8270 GSEABenchmarkeR 65 GSEAlm 58 GSEAmining 67 gsean 43 GSgalgoR 52 GSReg 42 GSRI 38 GSVA 5274 gtrellis 106 GUIDEseq 51 Guitar 126 Gviz 3801 GWAS.BAYES 50 gwascat 556 GWASTools 577 gwasurvivr 70 GWENA 166 h5vc 56 hapFabia 38 Harman 167 HarmonizR 16 Harshlight 40 hca 54 HCABrowser 2 HCAExplorer 1 HCAMatrixBrowser 1 HCsnip 2 HDF5Array 11532 HDTD 51 heatmaps 232 Heatplus 360 HelloRanges 102 HELP 40 HEM 37 hermes 86 HERON 12 Herper 162 hexbin 17 HGC 63 hiAnnotator 86 HIBAG 131 HiCBricks 113 HiCcompare 242 HiCDCPlus 62 HiCDOC 80 HiCExperiment 106 HiContacts 86 HiCool 47 hicrep 7 hicVennDiagram 14 hierGWAS 56 hierinf 47 HilbertCurve 72 HilbertVis 166 HilbertVisGUI 25 HiLDA 52 hipathia 115 HIPPO 38 hiReadsProcessor 43 HIREewas 50 HiTC 126 hmdbQuery 65 HMMcopy 278 hoodscanR 14 hopach 245 HPAanalyze 124 hpar 255 HPAStainR 29 HPiP 53 HTqPCR 143 HTSanalyzeR 5 HTSeqGenie 35 htSeqTools 5 HTSFilter 200 HubPub 100 HumanTranscriptomeCompendium 43 hummingbird 37 HybridMTest 102 hypeR 77 hyperdraw 85 hypergraph 105 iASeq 48 iasva 37 iBBiG 122 ibh 55 iBMQ 32 iCARE 94 Icens 405 icetea 35 iCheck 35 iChip 36 iClusterPlus 319 iCNV 38 iCOBRA 153 ideal 99 IdeoViz 56 idiogram 40 IdMappingAnalysis 3 IdMappingRetrieval 2 idpr 55 idr2d 41 IFAA 40 iFlow 1 iGC 50 IgGeneUsage 39 igvR 94 IHW 652 illuminaio 2782 ILoReg 35 imageHTS 14 IMAS 40 imcRtools 153 Imetagene 2 IMMAN 40 ImmuneSpaceR 45 immunoClust 42 immunotation 50 IMPCdata 49 ImpulseDE 3 ImpulseDE2 7 impute 10097 INDEED 50 iNETgrate 21 infercnv 1103 infinityFlow 48 Informeasure 42 InPAS 39 INPower 53 inSilicoDb 5 inSilicoMerging 6 INSPEcT 53 INTACT 35 InTAD 38 intansv 47 interacCircos 65 InteractionSet 1638 InteractiveComplexHeatmap 348 interactiveDisplay 74 interactiveDisplayBase 9935 InterCellar 66 IntEREst 41 InterMineR 51 IntOMICS 32 IntramiRExploreR 37 inveRsion 4 IONiseR 52 iontree 3 iPAC 75 iPath 35 ipdDb 93 IPO 115 IPPD 4 IRanges 48957 IRISFGM 80 IrisSpatialFeatures 1 ISAnalytics 44 iSEE 378 iSEEde 18 iSEEhex 103 iSEEhub 88 iSEEindex 17 iSEEpathways 13 iSEEu 80 iSeq 49 ISLET 39 iSNetwork 1 isobar 63 IsoBayes 11 IsoCorrectoR 94 IsoCorrectoRGUI 45 IsoformSwitchAnalyzeR 244 IsoGeneGUI 4 ISoLDE 49 isomiRs 105 iSPlot 1 ITALICS 42 iterativeBMA 39 iterativeBMAsurv 50 iterClust 41 iteremoval 3 IVAS 60 ivygapSE 35 IWTomics 38 jmosaics 2 joda 3 JunctionSeq 7 karyoploteR 837 katdetectr 43 KBoost 51 KCsmart 38 kebabs 125 KEGGgraph 5418 KEGGlincs 47 keggorth 1 keggorthology 123 KEGGprofile 12 KEGGREST 34586 KEGGSOAP 4 kimod 2 KinSwingR 42 kissDE 32 KnowSeq 40 LACE 96 lapmix 34 LBE 257 ldblock 60 LEA 510 LedPred 49 lefser 551 lemur 18 les 83 levi 50 lfa 305 limma 31924 limmaGUI 51 LINC 2 LineagePulse 38 lineagespot 32 LinkHD 39 Linnorm 163 LinTInd 40 lionessR 44 lipidr 176 LiquidAssociation 59 lisaClust 110 lmdme 38 LMGene 4 LOBSTAHS 44 loci2path 36 logicFS 80 logitT 28 Logolas 3 lol 3 LOLA 240 LoomExperiment 587 LowMACA 13 LPE 80 LPEadj 35 lpNet 50 lpsymphony 1193 LRBaseDbi 100 LRcell 45 lumi 1130 LVSmiRNA 3 LymphoSeq 48 M3C 770 M3D 2 M3Drop 549 m6Aboost 33 maanova 15 Maaslin2 883 Macarron 35 macat 44 maCorrPlot 51 MACPET 4 MACSQuantifyR 47 MACSr 94 maDB 2 made4 220 MADSEQ 35 maftools 2596 MAGAR 109 MAGeCKFlute 340 magpie 31 magrene 35 MAI 42 maigesPack 34 MAIT 47 makecdfenv 130 makePlatformDesign 1 MANOR 40 manta 5 MantelCorr 47 mAPKL 11 maPredictDSC 38 mapscape 53 mariner 37 marr 35 marray 1720 martini 42 maser 101 maSigPro 239 maskBAD 38 MassArray 51 massiR 39 MassSpecWavelet 1800 MAST 2001 mastR 89 matchBox 50 matchprobes 2 MatrixGenerics 37967 MatrixQCvis 105 MatrixRider 36 matter 174 MaxContrastProjection 3 MBAmethyl 44 MBASED 46 MBCB 37 MBECS 47 mbkmeans 426 mbOmic 21 mBPCR 41 MBQN 38 mbQTL 31 MBttest 50 mcaGUI 3 MCbiclust 38 MCRestimate 3 mCSEA 85 mdgsa 5 mdp 59 mdqc 93 MDTS 41 MEAL 65 MeasurementError.cor 48 MEAT 36 MEB 35 MEDIPS 91 MEDME 39 megadepth 117 MEIGOR 38 Melissa 38 memes 175 MergeMaid 6 Mergeomics 61 MeSHDbi 199 meshes 123 meshr 99 MeSHSim 1 MesKit 56 messina 52 metaArray 4 Metab 28 metabCombiner 40 metabinR 46 MetaboAnnotation 320 MetaboCoreUtils 910 metabolomicsWorkbenchR 62 metabomxtr 40 MetaboSignal 93 metaCCA 203 MetaCyto 49 metagene 35 metagene2 56 metagenomeFeatures 2 metagenomeSeq 1498 metahdep 54 metaMS 88 MetaNeighbor 79 MetaPhOR 35 metapod 4332 metapone 52 metaSeq 49 metaseqR 6 metaseqR2 30 metavizr 8 MetaVolcanoR 58 metaX 2 MetCirc 43 MethCP 9 methimpute 42 methInheritSim 45 MethPed 39 MethReg 59 methrix 63 MethTargetedNGS 39 methVisual 3 methyAnalysis 8 MethylAid 61 methylCC 52 methylclock 129 methylGSA 96 methylInheritance 48 methylKit 590 MethylMix 87 methylMnM 52 methylPipe 87 methylscaper 38 MethylSeekR 122 methylSig 49 methylumi 1404 methyvim 3 MetID 42 MetNet 42 mfa 70 Mfuzz 1087 MGFM 41 MGFR 42 mgsa 102 mia 1358 miaSim 87 miaViz 215 MiChip 36 microbiome 1606 microbiomeDASim 39 microbiomeExplorer 56 microbiomeMarker 346 MicrobiomeProfiler 84 MicrobiotaProcess 460 microRNA 138 microSTASIS 33 MICSQTL 17 midasHLA 50 MIGSA 11 miloR 240 mimager 38 MIMOSA 28 mina 45 MineICA 51 minet 657 minfi 2185 MinimumDistance 38 MiPP 36 miQC 95 MIRA 87 MiRaGE 42 miRBaseConverter 136 miRcomp 39 mirIntegrator 39 miRLAB 42 miRmine 27 miRNAmeConverter 46 miRNApath 64 miRNAtap 120 miRSM 27 miRsponge 1 miRspongeR 43 Mirsynergy 2 mirTarRnaSeq 64 missMethyl 999 missRows 40 mistyR 97 mitch 68 mitoClone2 33 mitoODE 2 mixOmics 2973 MLInterfaces 325 mlm4omics 1 MLP 101 MLSeq 125 MMAPPR2 21 MMDiff 2 MMDiff2 39 mmgmos 0 mmnet 1 MmPalateMiRNA 3 MMUPHin 84 mnem 94 moanin 110 MobilityTransformR 32 MODA 42 ModCon 46 Modstrings 123 MOFA 5 MOFA2 418 MOGAMUN 39 mogsa 142 MoleculeExperiment 42 MOMA 47 monaLisa 93 monocle 2908 Moonlight2R 12 MoonlightR 44 MoPS 3 mosaics 112 mosbi 40 MOSim 38 Motif2Site 38 motifbreakR 144 motifcounter 45 MotifDb 618 motifmatchr 1163 motifRG 5 motifStack 631 MotIV 24 MouseFM 88 MPFE 46 mpra 43 MPRAnalyze 53 MQmetrics 51 mQTL.NMR 2 msa 1447 MSA2dist 106 MsBackendMassbank 53 MsBackendMgf 456 MsBackendMsp 160 MsBackendRawFileReader 39 MsBackendSql 36 MsCoreUtils 3252 MsDataHub 39 MSEADbi 1 MsExperiment 589 MsFeatures 1559 msgbsR 44 MSGFgui 4 MSGFplus 9 msImpute 64 mslp 34 msmsEDA 238 msmsTests 226 MSnbase 3039 MSnID 224 MSPrep 92 msPurity 64 msqrob2 97 MsQuality 39 MSstats 440 MSstatsBig 11 MSstatsConvert 416 MSstatsLiP 48 MSstatsLOBD 49 MSstatsPTM 152 MSstatsQC 56 MSstatsQCgui 32 MSstatsSampleSize 24 MSstatsShiny 76 MSstatsTMT 234 MSstatsTMTPTM 1 MTseeker 1 MuData 43 Mulcom 58 MultiAssayExperiment 4503 MultiBaC 52 multiClust 54 multicrispr 40 MultiDataSet 1097 multiGSEA 100 multiHiCcompare 152 MultiMed 56 multiMiR 220 MultimodalExperiment 30 multiOmicsViz 37 MultiRNAflow 13 multiscan 36 multiSight 77 multiWGCNA 27 multtest 11847 mumosa 55 MungeSumstats 825 muscat 364 muscle 286 musicatk 59 MutationalPatterns 311 MVCClass 84 mvGST 1 MWASTools 113 mygene 349 myvariant 63 mzID 2874 mzR 3142 NADfinder 33 NanoMethViz 59 NanoStringDiff 82 NanoStringNCTools 337 NanoStringQCPro 50 nanotatoR 97 NanoTube 70 NarrowPeaks 3 NBAMSeq 71 NBSplice 10 ncdfFlow 1044 ncGTW 30 NCIgraph 80 ncRNAtools 38 ndexr 59 neaGUI 2 nearBynding 36 Nebulosa 916 NeighborNet 24 nem 8 nempi 35 NetActivity 38 netbenchmark 3 netbiov 37 netboost 34 netboxr 10 netDx 39 nethet 38 netOmics 41 NetPathMiner 60 netprioR 50 netReg 2 netresponse 47 NetSAM 43 netSmooth 53 networkBMA 5 netZooR 45 NeuCA 26 NewWave 87 NGScopy 2 ngsReports 68 nipalsMCIA 13 nnNorm 40 nnSVG 70 NOISeq 544 nondetects 49 NoRCE 42 normalize450K 36 NormalyzerDE 124 NormqPCR 169 normr 121 NPARC 45 npGSEA 45 NTW 50 nucleoSim 44 nucleR 57 nuCpos 50 nudge 2 nullranges 134 NuPoP 66 NxtIRFcore 24 occugene 46 OCplus 65 octad 36 ODER 20 odseq 56 OGRE 39 OGSA 2 oligo 1594 oligoClasses 1636 OLIN 65 OLINgui 36 omada 29 OmaDB 174 omicade4 117 OmicCircos 169 omicplotR 44 omicRexposome 39 OmicsLonDA 26 OmicsMarkeR 2 OMICsPCA 40 omicsPrint 41 omicsViewer 43 Omixer 53 OmnipathR 484 ompBAM 87 Onassis 3 oncomix 37 oncoscanR 35 OncoScore 39 OncoSimulR 48 oneChannelGUI 4 oneSENSE 15 onlineFDR 51 ontoCAT 4 ontoProc 189 ontoTools 1 openCyto 650 openPrimeR 108 openPrimeRui 47 OpenStats 49 OperaMate 1 oposSOM 57 oppar 37 oppti 35 optimalFlow 37 OPWeight 39 OrderedList 68 ORFhunteR 41 ORFik 172 OrganismDbi 3101 Organism.dplyr 391 orthogene 303 orthos 13 OSAT 58 Oscope 72 OTUbase 39 OutlierD 4 OUTRIDER 183 OutSplice 26 OVESEG 36 PAA 49 packFinder 42 padma 40 PADOG 200 pageRank 36 PAIRADISE 75 paircompviz 40 pairedGSEA 24 pairkat 32 pairseqsim 1 pamr 4 pandaR 111 panelcn.mops 61 PAnnBuilder 3 PanomiR 43 panp 37 PANR 39 PanViz 45 PanVizGenerator 4 PAPi 6 pareg 30 parglms 38 parody 88 partCNV 15 PAST 38 Path2PPI 59 pathifier 130 PathNet 63 PathoStat 52 pathprint 2 pathRender 38 pathVar 37 pathview 4243 pathwayPCA 81 PathwaySplice 2 PatientGeneSets 1 paxtoolsr 89 Pbase 2 pbcmc 2 pcaExplorer 435 pcaGoPromoter 5 pcaMethods 4870 PCAN 45 PCAtools 1120 pcot2 4 PCpheno 3 pcxn 47 PDATK 64 pdInfoBuilder 96 pdmclass 3 PeacoQC 170 peakPantheR 43 PECA 43 peco 35 pengls 33 PepsNMR 112 pepStat 39 pepXMLTab 62 PERFect 39 periodicDNA 41 perturbatr 3 pfamAnalyzeR 182 PFP 21 PGA 4 pgca 49 PGSEA 38 pgUtils 2 phantasus 136 phantasusLite 12 PharmacoGx 209 phemd 33 phenoDist 2 PhenoGeneRanker 47 phenomis 41 phenopath 79 phenoTest 96 PhenStat 41 philr 181 PhIPData 81 phosphonormalizer 49 PhosR 90 PhyloProfile 52 phyloseq 5184 Pi 64 piano 361 pickgene 49 PICS 83 Pigengene 94 PING 41 pint 3 pipeComp 39 pipeFrame 139 pkgDepTools 14 planet 170 planttfhunter 29 plasmut 12 plateCore 3 plethy 12 plgem 89 plier 100 PloGO2 53 plotgardener 300 plotGrouper 52 PLPE 38 plrs 3 plw 3 plyinteractions 17 plyranges 1104 pmm 47 pmp 108 PoDCall 52 podkat 43 pogos 46 polyester 112 Polyfit 2 POMA 66 POST 3 PoTRA 5 PowerExplorer 3 powerTCR 380 POWSC 42 ppcseq 40 PPInfer 99 ppiStats 4 pqsfinder 64 prada 11 pram 35 prebs 42 preciseTAD 37 PrecisionTrialDrawer 3 PREDA 70 predictionet 4 preprocessCore 14162 primirTSS 41 PrInCE 41 Prize 2 proActiv 52 proBAMr 40 proBatch 47 PROcess 74 procoil 41 ProCoNA 2 proDA 195 proFIA 9 profileplyr 204 profileScoreDist 35 progeny 377 projectR 90 pRoloc 221 pRolocGUI 68 PROMISE 71 PROPER 70 PROPS 34 Prostar 61 prot2D 3 proteasy 29 proteinProfiles 47 ProteoDisco 36 ProteomicsAnnotationHubData 3 ProteoMM 66 proteoQC 3 protGear 38 ProtGenerics 11164 PSEA 39 psichomics 54 PSICQUIC 7 PSMatch 131 psygenet2r 46 ptairMS 32 PubScore 2 pulsedSilac 3 puma 81 PureCN 142 pvac 35 pvca 236 Pviz 55 PWMEnrich 143 pwOmics 91 pwrEWAS 35 qckitfastq 52 qcmetrics 64 QDNAseq 332 QFeatures 1070 qmtools 38 qpcrNorm 42 qpgraph 146 qPLEXanalyzer 55 qrqc 26 qsea 53 qsmooth 112 QSutils 42 qsvaR 97 QTLExperiment 12 Qtlizer 37 QUALIFIER 3 quantiseqr 449 quantro 298 quantsmooth 617 QuartPAC 35 QuasR 319 QuaternaryProd 74 QUBIC 139 qusage 377 qvalue 16379 R3CPET 35 r3Cseq 74 R453Plus1Toolbox 41 R4RNA 592 RadioGx 41 raer 11 RaggedExperiment 873 RAIDS 12 rain 75 rama 23 RamiGO 4 ramr 36 ramwas 117 RandomWalkRestartMH 108 randPack 39 randRotation 46 RankProd 270 RAREsim 45 RareVariantVis 39 Rariant 2 Rarr 99 rawrr 199 RbcBook1 59 Rbec 35 RBGL 9224 RBioFormats 67 RBioinf 45 rBiopaxParser 158 RBM 44 Rbowtie 451 Rbowtie2 288 rbsurv 45 Rbwa 105 Rcade 11 RCAS 89 RCASPAR 47 rcellminer 54 rCGH 80 Rchemcpp 3 RchyOptimyx 4 RcisTarget 888 RCM 42 Rcollectl 24 Rcpi 99 RCSL 39 Rcwl 65 RcwlPipelines 60 RCX 90 RCy3 786 RCyjs 59 RCytoscape 6 RDAVIDWebService 26 Rdbi 2 RdbiPgSQL 1 rDGIdb 80 Rdisop 470 RDRToolbox 113 ReactomeContentService4R 100 ReactomeGraph4R 35 ReactomeGSA 225 ReactomePA 2220 readat 4 ReadqPCR 196 reb 3 REBET 36 rebook 217 receptLoss 31 reconsi 34 recount 395 recount3 296 recountmethylation 39 recoup 38 RedeR 291 RedisParam 34 REDseq 56 RefNet 2 RefPlus 36 RegEnrich 95 regionalpcs 12 RegionalST 14 regioneR 1918 regioneReloaded 33 regionReport 94 regsplice 33 regutools 42 REMP 46 Repitools 306 ReportingTools 703 reposTools 0 RepViz 93 ReQON 34 ResidualMatrix 3336 RESOLVE 38 Resourcerer 2 restfulSE 98 retrofit 32 ReUseData 20 rexposome 86 rfaRm 33 Rfastp 128 rflowcyt 2 rfPred 41 rGADEM 265 RGalaxy 4 rGenomeTracks 36 Rgin 3 RGMQL 28 RgnTX 30 rgoslin 65 RGraph2js 38 Rgraphviz 9573 rGREAT 626 RGSEA 55 rgsepd 37 rhdf5 19243 rhdf5client 101 rhdf5filters 18693 Rhdf5lib 21791 Rhisat2 191 Rhtslib 22714 rHVDM 3 RiboCrypt 34 RiboDiPA 41 RiboProfiling 60 ribor 37 riboSeqR 29 ribosomeProfilingQC 56 rifi 31 rifiComparative 25 RImmPort 50 Ringo 339 Rintact 1 RIPAT 27 RIPSeeker 15 Risa 44 RITAN 43 RIVER 36 RJMCMCNucleosomes 36 RLassoCox 58 RLMM 51 RLSeq 32 RMAGEML 1 Rmagpie 35 RMAPPER 3 RMassBank 77 rMAT 4 rmelting 69 RmiR 4 Rmmquant 36 rmspc 43 RNAAgeCalc 59 RNAdecay 40 rnaEditr 35 RNAinteract 50 RNAither 3 RNAmodR 74 RNAmodR.AlkAnilineSeq 39 RNAmodR.ML 31 RNAmodR.RiboMethSeq 35 RNAprobR 2 RNAsense 34 rnaseqcomp 61 RNAseqCovarImpute 11 rnaSeqMap 4 RNASeqPower 130 RNASeqR 10 RnaSeqSampleSize 77 RnBeads 243 Rnits 32 roar 40 roastgsa 12 ROC 1051 ROCpAI 34 RolDE 38 Roleswitch 3 Rolexa 3 rols 377 ROntoTools 163 ropls 1097 ROSeq 34 ROTS 187 RPA 60 rprimer 59 RProtoBufLib 2333 RpsiXML 7 rpx 238 Rqc 254 rqt 41 rqubic 64 rRDP 52 Rredland 1 RRHO 100 rrvgo 415 Rsamtools 21980 rsbml 124 rScudo 40 rsemmed 48 RSeqAn 87 rSFFreader 2 RSNPper 1 Rsubread 2290 RSVSim 44 rSWeeP 47 rTANDEM 7 RTCA 41 RTCGA 566 RTCGAToolbox 576 RTN 137 RTNduals 67 RTNsurvival 52 RTools4TB 1 RTopper 35 Rtpca 36 rtracklayer 20212 Rtreemix 38 rTRM 115 rTRMui 39 runibic 69 Ruuid 3 RUVcorr 45 RUVnormalize 54 RUVSeq 895 Rvisdiff 12 RVS 36 RWebServices 2 rWikiPathways 373 S4Arrays 26421 S4Vectors 53539 safe 550 SAGElyzer 1 sagenhaft 37 SAGx 7 SAIGEgds 51 samExploreR 3 sampleClassifier 39 SamSPECTRAL 121 sangeranalyseR 168 sangerseqR 816 SANTA 59 sapFinder 2 saps 1 SARC 12 sarks 34 satuRn 232 savR 40 SBGNview 142 sbgr 1 SBMLR 62 SC3 404 Scale4C 37 ScaledMatrix 11382 scAlign 16 scanMiR 60 scanMiRApp 46 scAnnotatR 117 SCAN.UPC 94 SCANVIS 53 SCArray 61 SCArray.sat 31 SCATE 85 scater 6465 scatterHatch 46 scBFA 40 SCBN 76 scBubbletree 38 scCB2 38 scClassifR 2 scClassify 68 sccomp 74 scDataviz 61 scDblFinder 1257 scDD 127 scDDboost 34 scde 327 scDesign3 19 scds 476 SCFA 38 scFeatureFilter 51 scFeatures 43 scfind 2 scGPS 44 schex 197 scHOT 57 scider 12 scifer 35 ScISI 8 scMAGeCK 22 scmap 276 scMerge 464 scMET 40 scmeth 46 SCnorm 82 scone 88 Sconify 34 SCOPE 48 scoreInvHap 34 scp 110 scPCA 75 scPipe 121 scran 4458 scReClassify 35 scRecover 48 screenCounter 28 ScreenR 32 scRepertoire 343 scRNAseqApp 38 scruff 48 scry 205 scShapes 35 scsR 2 scTensor 102 scTGIF 124 scTHI 34 scTreeViz 39 scuttle 9450 scviR 32 SDAMS 41 sechm 133 segmenter 35 segmentSeq 32 selectKSigs 32 SELEX 41 SemDist 40 semisup 47 SemSim 1 SEPA 2 SEPIRA 23 seq2pathway 102 seqArchR 63 seqArchRplus 26 SeqArray 799 seqbias 61 seqCAT 35 seqCNA 46 seqcombo 53 SeqGate 33 SeqGSEA 114 seq.hotSPOT 28 seqLogo 3054 seqPattern 581 seqplots 7 seqsetvis 50 SeqSQC 77 seqTools 111 SeqVarTools 423 sesame 631 SEtools 115 sevenbridges 51 sevenC 38 SGCP 84 SGSeq 274 SharedObject 115 shinyepico 44 shinyMethyl 79 shinyTANDEM 3 ShortRead 5982 SIAMCAT 97 SICtools 33 sigaR 5 SigCheck 37 sigFeature 178 SigFuge 37 siggenes 3059 sights 41 signatureSearch 184 signeR 56 signet 3 signifinder 45 sigPathway 43 SigsPack 35 sigsquared 35 SIM 39 SIMAT 37 SimBindProfiles 32 SimBu 48 SIMD 34 SimFFPE 38 similaRpeak 59 SIMLR 249 simona 21 simpleaffy 98 simpleSeg 50 simplifyEnrichment 627 simulatorAPMS 1 simulatorZ 3 sincell 58 single 38 SingleCellExperiment 14335 SingleCellSignalR 227 singleCellTK 217 SingleMoleculeFootprinting 33 SingleR 3703 singscore 1230 SiPSiC 32 SISPA 29 sitadela 37 sitePath 43 sizepower 58 SJava 2 skewr 30 slalom 92 SLGI 4 slingshot 1328 slinky 3 SLqPCR 56 SMAD 51 SMAP 49 SMITE 43 SNAGEE 51 snapCGH 78 snapcount 49 snifter 119 snm 160 SNPchip 10 SNPediaR 45 SNPhood 39 snpMatrix 8 SNPRelate 1523 snpStats 2155 soGGi 288 sojourner 9 SomatiCA 2 SomaticSignatures 144 SOMNiBUS 46 SpacePAC 55 spade 5 Spaniel 61 sparrow 116 SparseArray 13575 sparseDOSSA 44 sparseMatrixStats 14683 sparsenetgls 49 SparseSignatures 44 spaSim 42 SpatialCPie 63 spatialDE 89 SpatialDecon 156 SpatialExperiment 1272 SpatialFeatureExperiment 126 spatialHeatmap 125 SpatialOmicsOverlay 40 spatzie 33 speckle 106 specL 56 SpeCond 54 Spectra 1182 SpectralTAD 74 SPEM 52 SPIA 584 SPIAT 84 spicyR 151 SpidermiR 70 spikeLI 45 spiky 37 spkTools 33 splatter 423 splicegear 3 spliceR 5 spliceSites 3 SpliceWiz 65 SplicingFactory 33 SplicingGraphs 68 splineTCDiffExpr 0 splineTimeR 56 SPLINTER 35 splots 159 SPONGE 61 SpotClean 74 SPOTlight 206 spotSegmentation 2 spqn 42 SPsimSeq 118 SQLDataFrame 36 SQUADD 46 sRACIPE 50 SRAdb 364 sRAP 4 SRGnet 2 srnadiff 24 sscore 25 sscu 37 sSeq 149 ssize 86 sSNAPPY 96 SSPA 57 ssPATHS 32 ssrch 80 ssviz 44 stageR 175 stam 1 STAN 13 standR 86 staRank 33 StarBioTrek 41 Starr 3 STATegRa 43 Statial 48 statTarget 90 STdeconvolve 104 stepNorm 35 stepwiseCM 2 stJoincount 44 strandCheckR 38 Streamer 38 STRINGdb 1000 STROMA4 27 struct 125 Structstrings 100 structToolbox 89 StructuralVariantAnnotation 168 SubCellBarCode 40 subSeq 56 SUITOR 33 SummarizedBenchmark 42 SummarizedExperiment 36506 Summix 46 supersigs 39 supraHex 436 surfaltr 39 survcomp 1014 survtype 42 Sushi 62 sva 6869 svaNUMT 38 SVAPLSseq 2 svaRetro 37 SVM2CRM 2 SVMDO 85 SWATH2stats 48 SwathXtend 62 swfdr 53 SwimR 2 switchBox 112 switchde 42 synapsis 34 synapter 66 synergyfinder 178 SynExtend 41 synlet 37 SynMut 35 syntenet 96 systemPipeR 1137 systemPipeShiny 60 systemPipeTools 42 tadar 11 TADCompare 67 tanggle 53 TAPseq 46 target 37 TargetDecoy 34 TargetScore 58 TargetSearch 65 TarSeqQC 11 TBSignatureProfiler 43 TCC 167 TCGAbiolinks 3287 TCGAbiolinksGUI 30 TCGAutils 816 TCseq 131 TDARACNE 9 TDbasedUFE 56 TDbasedUFEadv 41 TEKRABber 93 TENxIO 40 tenXplore 36 TEQC 49 ternarynet 37 terraTCGAdata 34 TFARM 34 TFBSTools 2687 TFEA.ChIP 53 TFHAZ 31 TFutils 64 tidybulk 184 tidySingleCellExperiment 171 tidySummarizedExperiment 311 tigre 42 TileDBArray 38 tilingArray 99 timecourse 52 timeOmics 59 timescape 78 TimeSeriesExperiment 6 TimiRGeN 50 TIN 39 TissueEnrich 147 TitanCNA 59 tkWidgets 1202 tLOH 32 TMixClust 49 TNBC.CMS 40 TnT 36 TOAST 338 tofsims 2 tomoda 33 tomoseqr 34 TOP 27 ToPASeq 4 topconfects 168 topdownr 53 topGO 2914 ToxicoGx 41 TPP 77 TPP2D 41 tracktables 106 trackViewer 397 tradeSeq 454 TrajectoryGeometry 44 TrajectoryUtils 1657 transcriptogramer 46 transcriptR 45 transformGamPoi 49 transite 42 tRanslatome 98 transomics2cytoscape 36 TransView 37 TraRe 7 traseR 37 Travel 5 traviz 39 TreeAndLeaf 112 treeio 19021 treekoR 37 TreeSummarizedExperiment 1354 TREG 39 trena 37 TReNA 0 Trendy 48 TRESS 78 tricycle 187 triform 4 trigger 37 trio 74 triplex 39 tripr 52 tRNA 94 tRNAdbImport 77 tRNAscanImport 54 TRONCO 55 TSAR 11 TSCAN 550 tscR 26 tspair 5 TSRchitect 4 TSSi 3 ttgsea 80 TTMap 35 TurboNorm 36 TVTB 37 tweeDEseq 114 twilight 94 twoddpcr 40 txcutr 34 tximeta 1153 tximport 3341 TxRegInfra 2 TypeInfo 47 UCell 1105 Ularcirc 40 UMI4Cats 44 uncoverappLib 35 UNDO 59 unifiedWMWqPCR 38 UniProt.ws 380 Uniquorn 37 universalmotif 440 updateObject 35 uSORT 35 VAExprs 35 VanillaICE 146 VarCon 37 variancePartition 808 VariantAnnotation 8967 VariantExperiment 41 VariantFiltering 53 VariantTools 133 vasp 1 VaSP 35 vbmp 66 VCFArray 36 VDJdive 38 Vega 3 VegaMC 38 velociraptor 102 veloviz 53 VennDetail 205 VERSO 49 vidger 89 viper 658 virtualArray 3 ViSEAGO 111 vissE 85 Voyager 84 VplotR 50 vsclust 41 vsn 4979 vtpnet 44 vulcan 39 waddR 45 wateRmelon 740 wavClusteR 45 waveTiling 4 weaver 56 webbioc 42 weitrix 39 widgetInvoke 1 widgetTools 1215 wiggleplotr 151 wpm 46 wppi 40 Wrench 1486 XBSeq 3 XCIR 2 xcms 1683 xcore 40 XDE 38 Xeva 37 XINA 37 xmapbridge 49 xmapcore 2 XNAString 40 xps 6 XVector 45441 y2hStat 0 yamss 44 YAPSA 58 yaqcaffy 5 yarn 115 zellkonverter 980 zenith 108 zFPKM 104 zinbwave 809 zlibbioc 46354 ZygosityPredictor 26