Goals for these slides: only pointers

• Phyloseq: Data integration
• Transformations, filtering
• Testing tools: networks, hierarchical testing, DESeq2, ..
• Data integration, CCA, DPCOA,..
• Reproducible Research: available Rmd files

Phyloseq

Phyloseq API

Heterogeneous Data Objects: S4 classes

(McMurdie and Holmes, 2013, Plos ONE).