Code for using BridgeDb identifier mapping framework from within R

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Documentation for package ‘BridgeDbR’ version 2.19.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BridgeDbR-package	BridgeDbR Package.
BridgeDbR	BridgeDbR Package.
fullNameExists	Determines if the full name corresponds to any known data source.
getAttributes	Returns the attributes of the given identifier.
getBridgeNames	Method to list the BridgeDb identifier mapping file names as available from the download site.
getDatabase	Downloads a identifier mapping database for the given organism.
getDataSource	Return a DataSource object based on either a name, Bioregistry.io prefix, or system code.
getFullName	Return the name of a particular data source.
getMatchingSources	Return a list of data sources of which the identifier pattern matches the identifier given.
getOrganismCode	Return the code of a particular organism.
getProperties	BridgeDb database properties.
getSystemCode	Return the system code of a particular data source.
loadDatabase	Loads a BridgeDb identifier mapping database (.bridge file) as an IDMapper Java-Object.
map	Converts one identifier into other identifiers for the given target data source.
maps	Converts multiple identifiers into other identifiers for the given target data source.
registerDataSource	Registers a new DataSource based on the given name or system code.
systemCodeExists	Determines if the system code corresponds to any known data source.
xrefExists	Checks if the given identifier exists