DOI: 10.18129/B9.bioc.Logolas    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of Logolas; for the stable release version, see Logolas.

EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices

Bioconductor version: Development (3.12)

Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.

Author: Kushal Dey <kkdey at uchicago.edu>, Dongyue Xie <kkdey at uchicago.edu>, Peter Carbonetto <kkdey at uchicago.edu>, Matthew Stephens <kkdey at uchicago.edu>

Maintainer: Kushal Dey <kkdey at uchicago.edu>

Citation (from within R, enter citation("Logolas")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews Alignment, Bayesian, SequenceMatching, Software, Visualization
Version 1.13.1
In Bioconductor since BioC 3.5 (R-3.4) (3.5 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports grid, SQUAREM, LaplacesDemon, stats, graphics, utils, ggplot2, gridBase, Biostrings
Suggests knitr, rmarkdown, BiocStyle, Biobase, devtools, xtable, gridExtra, RColorBrewer, seqLogo, ggseqlogo
URL https://github.com/kkdey/Logolas
BugReports http://github.com/kkdey/Logolas/issues
Depends On Me
Imports Me
Suggests Me universalmotif
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/Logolas
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Logolas
Package Short Url https://bioconductor.org/packages/Logolas/
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