MTseeker

DOI: 10.18129/B9.bioc.MTseeker    

This is the development version of MTseeker; for the stable release version, see MTseeker.

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: Development (3.11)

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche <tim.triche at gmail.com>, Noor Sohail <tim.triche at gmail.com>, Ben Johnson <tim.triche at gmail.com>, Tim Vickers <tim.triche at gmail.com>, Azif Zubair <tim.triche at gmail.com>

Maintainer: Tim Triche <tim.triche at gmail.com>

Citation (from within R, enter citation("MTseeker")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MTseeker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Genetics, Metabolomics, Software, VariantAnnotation
Version 1.5.20
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License GPL-3
Depends R (>= 3.5.0), GenomeInfoDb, GenomicFeatures, GenomicAlignments, VariantAnnotation
Imports xml2, utils, viridis, methods, IRanges, Biobase, jsonlite, graphics, circlize, Rsamtools, S4Vectors, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
SystemRequirements
Enhances
URL
Depends On Me
Imports Me MTseekerData
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/MTseeker
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MTseeker
Package Short Url https://bioconductor.org/packages/MTseeker/
Package Downloads Report Download Stats

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