OmicsLonDA

DOI: 10.18129/B9.bioc.OmicsLonDA  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of OmicsLonDA; for the stable release version, see OmicsLonDA.

Omics Longitudinal Differential Analysis

Bioconductor version: Development (3.19)

Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups.

Author: Ahmed A. Metwally, Tom Zhang, Michael Snyder

Maintainer: Ahmed A. Metwally <ametwall at stanford.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OmicsLonDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Lipidomics, Metabolomics, Microbiome, Proteomics, Regression, Software, Survival, TimeCourse, Transcriptomics
Version	1.18.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.6)
Imports	SummarizedExperiment, gss, plyr, zoo, pracma, ggplot2, BiocParallel, parallel, grDevices, graphics, stats, utils, methods, BiocGenerics
LinkingTo
Suggests	knitr, rmarkdown, testthat, devtools, BiocManager
SystemRequirements
Enhances
URL	https://github.com/aametwally/OmicsLonDA
BugReports	https://github.com/aametwally/OmicsLonDA/issues
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/OmicsLonDA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OmicsLonDA
Package Short Url	https://bioconductor.org/packages/OmicsLonDA/
Package Downloads Report	Download Stats