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ReQON

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ReQON; for the stable release version, see ReQON.

Recalibrating Quality Of Nucleotides


Bioconductor version: Development (3.19)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Citation (from within R, enter citation("ReQON")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version 1.49.1
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
System Requirements Java version >= 1.6
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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReQON
Package Short Url https://bioconductor.org/packages/ReQON/
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