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This is the development version of StarBioTrek; for the stable release version, see StarBioTrek.


Bioconductor version: Development (3.19)

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

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Reference Manual PDF


biocViews GeneRegulation, KEGG, Network, Pathways, Software
Version 1.29.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 3)
Depends R (>= 3.3)
Imports SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2
System Requirements
URL https://github.com/claudiacava/StarBioTrek
Bug Reports https://github.com/claudiacava/StarBioTrek/issues
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Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package StarBioTrek_1.29.0.tar.gz
Windows Binary StarBioTrek_1.29.0.zip
macOS Binary (x86_64) StarBioTrek_1.29.0.tgz
macOS Binary (arm64) StarBioTrek_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/StarBioTrek
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/StarBioTrek
Bioc Package Browser https://code.bioconductor.org/browse/StarBioTrek/
Package Short Url https://bioconductor.org/packages/StarBioTrek/
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