adaptest

DOI: 10.18129/B9.bioc.adaptest    

This is the development version of adaptest; for the stable release version, see adaptest.

Data-Adaptive Statistics for High-Dimensional Multiple Testing

Bioconductor version: Development (3.11)

Data-adaptive test statistics represent a general methodology for performing multiple hypothesis testing on effects sizes while maintaining honest statistical inference when operating in high-dimensional settings (). The utilities provided here extend the use of this general methodology to many common data analytic challenges that arise in modern computational and genomic biology.

Author: Weixin Cai [aut, cre, cph], Nima Hejazi [aut], Alan Hubbard [ctb, ths]

Maintainer: Weixin Cai <wcai at berkeley.edu>

Citation (from within R, enter citation("adaptest")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("adaptest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, DimensionReduction, GeneExpression, Genetics, Microarray, MultipleComparison, Regression, Sequencing, Software
Version 1.7.0
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License GPL-2
Depends R (>= 3.5.0)
Imports origami (>= 1.0.0), tmle, calibrate, methods, graphics, stats, utils, SummarizedExperiment
LinkingTo
Suggests testthat, Matrix, SuperLearner, earth, gam, nnls, airway, rmarkdown, knitr, BiocStyle
SystemRequirements
Enhances
URL https://github.com/wilsoncai1992/adaptest
BugReports https://github.com/wilsoncai1992/adaptest/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/adaptest
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/adaptest
Package Short Url https://bioconductor.org/packages/adaptest/
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