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beadarraySNP

This is the development version of beadarraySNP; for the stable release version, see beadarraySNP.

Normalization and reporting of Illumina SNP bead arrays


Bioconductor version: Development (3.19)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("beadarraySNP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.69.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
Imports
System Requirements
URL
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Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/beadarraySNP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beadarraySNP
Package Short Url https://bioconductor.org/packages/beadarraySNP/
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