bigPint

DOI: 10.18129/B9.bioc.bigPint  

This is the development version of bigPint; for the stable release version, see bigPint.

Big multivariate data plotted interactively

Bioconductor version: Development (3.18)

Methods for visualizing large multivariate datasets using static and interactive scatterplot matrices, parallel coordinate plots, volcano plots, and litre plots. Includes examples for visualizing RNA-sequencing datasets and differentially expressed genes.

Author: Lindsay Rutter [aut, cre], Dianne Cook [aut]

Maintainer: Lindsay Rutter <lindsayannerutter at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bigPint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Clustering, DataImport, DifferentialExpression, GeneExpression, MultipleComparison, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.17.0
In Bioconductor since	BioC 3.9 (R-3.6) (4 years)
License	GPL-3
Depends	R (>= 3.6.0)
Imports	DelayedArray(>= 0.12.2), dplyr (>= 0.7.2), GGally (>= 1.3.2), ggplot2 (>= 2.2.1), graphics (>= 3.5.0), grDevices (>= 3.5.0), grid (>= 3.5.0), gridExtra (>= 2.3), hexbin (>= 1.27.1), Hmisc (>= 4.0.3), htmlwidgets (>= 0.9), methods (>= 3.5.2), plotly (>= 4.7.1), plyr (>= 1.8.4), RColorBrewer (>= 1.1.2), reshape (>= 0.8.7), shiny (>= 1.0.5), shinycssloaders (>= 0.2.0), shinydashboard (>= 0.6.1), stats (>= 3.5.0), stringr (>= 1.3.1), SummarizedExperiment(>= 1.16.1), tidyr (>= 0.7.0), utils (>= 3.5.0)
LinkingTo
Suggests	BiocGenerics(>= 0.29.1), data.table (>= 1.11.8), EDASeq(>= 2.14.0), edgeR(>= 3.22.2), gtools (>= 3.5.0), knitr (>= 1.13), matrixStats (>= 0.53.1), rmarkdown (>= 1.10), roxygen2 (>= 3.0.0), RUnit (>= 0.4.32), tibble (>= 1.4.2)
SystemRequirements
Enhances
URL	https://github.com/lindsayrutter/bigPint
BugReports	https://github.com/lindsayrutter/bigPint/issues
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/bigPint
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bigPint
Package Short Url	https://bioconductor.org/packages/bigPint/
Package Downloads Report	Download Stats