crisprseekplus
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of crisprseekplus; for the stable release version, see crisprseekplus.
crisprseekplus
Bioconductor version: Development (3.19)
Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.
Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>
Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>
citation("crisprseekplus")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("crisprseekplus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneRegulation, SequenceMatching, Software |
| Version | 1.29.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0), shiny, shinyjs, CRISPRseek |
| Imports | DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocManager, BSgenome, AnnotationDbi, hash |
| System Requirements | |
| URL | https://github.com/UMMS-Biocore/crisprseekplus |
| Bug Reports | https://github.com/UMMS-Biocore/crisprseekplus/issues/new |
See More
| Suggests | testthat, rmarkdown, knitr, R.rsp |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprseekplus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/crisprseekplus |
| Package Short Url | https://bioconductor.org/packages/crisprseekplus/ |
| Package Downloads Report | Download Stats |