miRmine
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of miRmine; for the stable release version, see miRmine.
Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment
Bioconductor version: Development (3.19)
miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.
Author: Dusan Randjelovic [aut, cre]
Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>
citation("miRmine")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miRmine")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software |
| Version | 1.25.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.4), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, DESeq2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/miRmine |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miRmine |
| Package Short Url | https://bioconductor.org/packages/miRmine/ |
| Package Downloads Report | Download Stats |