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miRmine

This is the development version of miRmine; for the stable release version, see miRmine.

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment


Bioconductor version: Development (3.19)

miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.

Author: Dusan Randjelovic [aut, cre]

Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>

Citation (from within R, enter citation("miRmine")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRmine")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRmine")
miRmine HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 3)
Depends R (>= 3.5.0), SummarizedExperiment
Imports
System Requirements
URL
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Suggests BiocStyle, knitr, rmarkdown, DESeq2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRmine_1.25.0.tar.gz
Windows Binary miRmine_1.25.1.zip
macOS Binary (x86_64) miRmine_1.25.1.tgz
macOS Binary (arm64) miRmine_1.25.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRmine
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRmine
Bioc Package Browser https://code.bioconductor.org/browse/miRmine/
Package Short Url https://bioconductor.org/packages/miRmine/
Package Downloads Report Download Stats