plrs

DOI: 10.18129/B9.bioc.plrs    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of plrs; for the stable release version, see plrs.

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Bioconductor version: Development (3.12)

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author: Gwenael G.R. Leday

Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>

Citation (from within R, enter citation("plrs")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("plrs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Regression, Software
Version 1.29.1
In Bioconductor since BioC 2.12 (R-3.0) (7.5 years)
License GPL (>=2.0)
Depends R (>= 2.10), Biobase
Imports BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils
LinkingTo
Suggests mvtnorm, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/plrs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plrs
Package Short Url https://bioconductor.org/packages/plrs/
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