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restfulSE

This is the development version of restfulSE; for the stable release version, see restfulSE.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface


Bioconductor version: Development (3.19)

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <shwetagopaul92 at gmail.com>

Citation (from within R, enter citation("restfulSE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("restfulSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("restfulSE")
restfulSE -- experiments with SE interface to remote HDF5 PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.6), SummarizedExperiment, DelayedArray
Imports utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang
System Requirements
URL
See More
Suggests knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle, restfulSEData, rmarkdown
Linking To
Enhances
Depends On Me tenXplore
Imports Me
Suggests Me BiocOncoTK, BiocSklearn
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package restfulSE_1.25.0.tar.gz
Windows Binary restfulSE_1.25.0.zip
macOS Binary (x86_64) restfulSE_1.25.0.tgz
macOS Binary (arm64) restfulSE_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/restfulSE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/restfulSE
Bioc Package Browser https://code.bioconductor.org/browse/restfulSE/
Package Short Url https://bioconductor.org/packages/restfulSE/
Package Downloads Report Download Stats