Changes in version 1.1.5 o Enabled differential testing with missing values. o Added data.frame output functionality from plotting functions. o Enabled multi-SE plotting in plot_normalization() and plot_imputation(). o Deprecated se2msn() and msn2se() functions. Use as('MSnSet') or as('SummarizedExperiment') from MSnbase package instead. o Added a vignette on missing value handling in DEP. o Added citation: Zhang, Smits, van Tilburg et al. Nature Protocols 2018. Changes in version 1.0.0 o First release of the DEP package for differential enrichment analysis of proteomics data.