Changes in version 1.11.1 CHANGES - Parallel reading is added to readBismark-method. BUG FIX - Some bugs are fixed in methHMMCMC-method to avoid creating infinity. Changes in version 1.9.2 CHANGES SINCE LAST RELEASE - Made compatible with R 4 following changes in some codes in R. - Citation is updated. Changes in version 1.3.1 CHANGES AND BUG FIX - A new citation is added. - Several bugs are fixed. Changes in version 0.99.17 CHANGES SINCE LAST RELEASE - A new function, compareDMCs() is added for plotting DMCs and average predicted methylation for for group comparison. - The manhattanDMCs() function is modified to plot regions of interests. Changes in version 0.99.16 CHANGES SINCE LAST RELEASE - The function findDMCs() is fixed for memory management. - The function methEM() is fixed for creating NaN in computing binomial probabilities. Changes in version 0.99.15 CHANGES SINCE LAST RELEASE - An option is added to findDMC that lets the user enters a function to calculate weights for GLM using the variances obtianed from MCMC. Changes in version 0.99.14 CHANGES SINCE LAST RELEASE - Several issues are fixed. - Some modification are done to expedite the speed of processes. - Instead of the parallel package, the BioParallel package is used. Changes in version 0.99.9 CHANGES SINCE LAST RELEASE - Some parameters in examples are changed to make the running time faster. - The BSData-method is changed to cBSData-method. - The BSDMCs-method is changed to cBSDMCs-method. Changes in version 0.99.0 CHANGES SINCE LAST RELEASE - We have refined some of the codes to speed up the running the package.