Changes in version 1.7.1 o add width and shift params of the gaussian distribution in the down-shift mode of msImpute to provide more control over the shape of the distribution when observed peptides have high average expression and missing is group-specific. Changes in version 1.3.0 o Users can now specify the rank of the model to fit by msImpute o Added mspip for identification transfer between runs using Maxquant results (Beta phase only) o Added evidenceToMatrix which creates limma compatible objects from MaxQuant evidence table Changes in version 0.99.26 o update doc for msImpute Changes in version 0.99.25 o fix typo in msImpute man page Changes in version 0.99.24 o Bug fix in the internal function l2bary Changes in version 0.99.23 o selectFeatures and msImpute now use information theoretic approaches to find informative features for MAR/MNAR diagnosis and estimation of optimal rank, respectively. o lambda in msImpute is now estimated from the data, using the bayesian interpretation of this shrinkage operator. o msImpute can be run in three modes: "v1" is the original implementation of softImpute-als algorithm, "v2" is the enhanced low-rank estimation implemented in this version update, "v2-mnar" is adaptation of low-rank models for MNAR data. More details about methods in documentation. Changes in version 0.99.22 o Submitted to Bioconductor