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CSSP

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CSSP.

ChIP-Seq Statistical Power


Bioconductor version: Release (3.18)

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Citation (from within R, enter citation("CSSP")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version 1.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends
Imports methods, splines, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CSSP
Package Short Url https://bioconductor.org/packages/CSSP/
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