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SISPA

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis


Bioconductor version: Release (3.18)

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("SISPA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.5), genefilter, GSVA, changepoint
Imports data.table, plyr, ggplot2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary SISPA_1.32.0.zip
macOS Binary (x86_64) SISPA_1.32.0.tgz
macOS Binary (arm64) SISPA_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SISPA
Package Short Url https://bioconductor.org/packages/SISPA/
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