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biodbMirbase

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see biodbMirbase.

biodbMirbase, a library for connecting to miRBase mature database


Bioconductor version: Release (3.18)

The biodbMirbase library is an extension of the biodb framework package, that provides access to miRBase mature database. It allows to retrieve entries by their accession number, and run specific web services. Description: The biodbMirbase library provides access to the miRBase Database, using biodb package framework.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbMirbase")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbMirbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbMirbase")
Introduction to the biodbMirbase package. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.5.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.1), R6, stringr, chk
System Requirements
URL
See More
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbMirbase_1.5.0.tar.gz
Windows Binary biodbMirbase_1.5.0.zip
macOS Binary (x86_64) biodbMirbase_1.5.0.tgz
macOS Binary (arm64) biodbMirbase_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbMirbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbMirbase
Bioc Package Browser https://code.bioconductor.org/browse/biodbMirbase/
Package Short Url https://bioconductor.org/packages/biodbMirbase/
Package Downloads Report Download Stats