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mbOmic

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mbOmic.

Integrative analysis of the microbiome and metabolome


Bioconductor version: Release (3.18)

The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.

Author: Congcong Gong [aut, cre]

Maintainer: Congcong Gong <congconggong33 at gmail.com>

Citation (from within R, enter citation("mbOmic")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mbOmic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Metabolomics, Microbiome, Network, Software
Version 1.6.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports parallel, doParallel, psych, WGCNA, data.table, igraph, visNetwork, cluster, clusterSim, methods, graphics, stats
System Requirements
URL https://github.com/gongcongcong/mbOmic
Bug Reports https://github.com/gongcongcong/mbOmic/issues
See More
Suggests testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/mbOmic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mbOmic
Package Short Url https://bioconductor.org/packages/mbOmic/
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