Changes in version 1.3.4 - Fix bug in tests when run on Windows due to uninherited namespace imports for testthat::context and testthat::expect_equal inside a bplapply call Changes in version 1.3.3 - Debugging BioC build ERROR caused by updates to CoreGx Changes in version 1.3.2 - Fix a bug in computeLimmaDiffExpr where subsetting a ToxicoSet doesn't subset the protocolData of a SummarizedExperiment, causing coercing to an ExpressionSet inside the function to fail - For now just deleting protocolData from the metadata of the SummarizedExperiment, but will eventually need to be fixed upstream in ORCESTRA Changes in version 1.3.1 - Molecular profile data is now subset in test to keep package size down Changes in version 1.3.0 - Spring 2021 Bioconductor release! Changes in version 1.1.0 - Continue to abstract functionality into CoreGx - Add additional plotting functions such as grouped boxplots - Extend coverage of unit tests to >90% - Implement a faster version of drugPertubationSignature - Add additional plotting functions - Include scripts for differential expression analysis and GSEA of toxico-genomic data (limma) Changes in version 1.0.0 - Package archived on CRAN - Package submitted to Biocondcutor - Modified package to depend on updated CoreGx - All molecularProfiles are now SummarizedExperiment instead of ExpressionSet - Abstracted some additional functions to CoreGx Changes in version 0.1.2 - Updated downloadTSet function to use published Zenodo DOIs to retrieve data - Modified rankGeneDrugsPerturbation to fix a bad unit conversion which would return concentrations in the wrong unit Changes in version 0.1.1 - Bug Fix: Regenerated TGGATESsmall (sample dataset) to fix make a result in the vignette consistent with previous releases. Changes in version 0.1.0 - Rewrote plots using ggplot2 to improve aesthetics - Also can now extend plotting functions using standard ggplot2 syntax - Improved package documentation Changes in version 0.0.1 - Minimal package submitted