CHANGES IN VERSION 1.5.3 ------------------------- BUG FIXES o Fix a bug, ID mapping, in function OutputNovelJun.R CHANGES IN VERSION 1.5.4 ------------------------- BUG FIXES o Fix a bug, novel junction coding sequence on '-' strand, in function OutputNovelJun.R CHANGES IN VERSION 1.5.5 ------------------------- BUG FIXES o Fix a bug in function OutputNovelJun.R CHANGES IN VERSION 1.8.2 ------------------------- UPDATED FUNCTIONS o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages CHANGES IN VERSION 1.13.1 ------------------------- BUG FIXES o Fix a small bug in function JunctionType.R NEW FEATURES o Update the function OutputVarproseq.R to output a data frame 'snvproseq' o Add a function OutputVarprocodingseq.R to output a data frame 'snvprocoding' CHANGES IN VERSION 1.13.2 ------------------------- UPDATED FUNCTIONS o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages CHANGES IN VERSION 1.14.1 ------------------------- UPDATED FUNCTIONS o Update mouse dbsnp version part in function PrepareAnnotationEnsembl.R o Update function OutputVarproseq.R, JunctionType.R and calculateRPKM.R NEW FEATURES o Update function OutputNovelJun.R to save '_jun_anno.RData', '_coding.RData' and '_junpep.RData', which could be used as input for proBAMr package CHANGES IN VERSION 1.15.2 ------------------------- UPDATED FUNCTIONS o Update function SharedJunc.R CHANGES IN VERSION 1.20.3 ------------------------- UPDATED FUNCTIONS o Fix bug in function PrepareAnnotationRefseq.R o Update function aaVariation.R to avoid translate 'TTG' and 'CTG' into 'M' CHANGES IN VERSION 1.26.1 ------------------------- BUG FIXES o Fix a small bug in function PrepareAnnotationRefseq.R