Changes in 0.99.0 (2020-03-23) + Refactor functions and workflow from pre-0.99.0 releases o methylSigReadData() replaced with the functions: o bsseq::read.bismark() o filter_loci_by_coverage() o filter_loci_by_location() o methylSigTile() replaced with the functions: o tile_by_regions() o tile_by_windows() o Differential testing should be preceded with: o filter_loci_by_group_coverage() o binomialDiffCalc() is replaced by diff_binomial() o methylSigCalc() is replaced by diff_methylSig() o methylSigDSS() is replaced by diff_dss_fit() and diff_dss_test() + See "Using methylSig" vignette for full example. + See "Updating methylSig Code" vignette for how to retrofit pre-0.99.0 code.