## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>", error = FALSE, warning = FALSE, message = FALSE, crop = NULL ) ## ----echo=FALSE, out.width='50%', fig.align='center'-------------------------- knitr::include_graphics(path = system.file("app", "www", "logo_lowres.png", package="InterCellar", mustWork=TRUE)) ## ----eval = FALSE------------------------------------------------------------- # if (!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # # BiocManager::install("InterCellar") ## ----setup-------------------------------------------------------------------- library(InterCellar) ## ----demostart, eval=FALSE---------------------------------------------------- # InterCellar::run_app( reproducible = TRUE ) ## ----echo=FALSE, out.width='120%',fig.align='center'-------------------------- knitr::include_graphics(path = "screenshots/upload.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/cl_verse_net.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/cl_verse_bar.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/g_verse_table.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/g_verse_dot.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/f_verse_sunburst.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/ipM_analysis.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/ipM_circle.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/ipM_function.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/MC_clust_bar.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/MC_clust_radar.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/MC_gene_dot.png") ## ----echo=FALSE, fig.align='center'------------------------------------------- knitr::include_graphics(path = "screenshots/MC_func_sun.png")